Issues

• Remove empty dir after cubids purge

  bug
  PennLINC/CuBIDS#494 · Filter by author tien-tong opened on Mar 13, 2026

• cubids purge updates unrelated files

  bug
  PennLINC/CuBIDS#474 · Filter by author singlesp opened on Oct 22, 2025
  

• Add option to create sessions.tsv with anonymized acquisition datetimes

  enhancement
  PennLINC/CuBIDS#472 · Filter by author tien-tong opened on Oct 17, 2025

• cubic group doesn't work with BIDS URIs in fmap IntendedFor

  bug
  PennLINC/CuBIDS#470 · Filter by author tien-tong opened on Oct 15, 2025

• cubids purge IndexError: list index out of range

  bug
  PennLINC/CuBIDS#461 · Filter by author tien-tong opened on Jul 15, 2025

• Compare QC metrics across variants

  enhancement
  PennLINC/CuBIDS#457 · Filter by author tsalo opened on Apr 7, 2025

• FileCollection metadata field may not be modified by cubids apply

  bug
  PennLINC/CuBIDS#456 · Filter by author tsalo opened on Apr 7, 2025 · 2.0.0

• Is it possible to use cubids to rename individual files?

  enhancement
  PennLINC/CuBIDS#452 · Filter by author mattcieslak opened on Mar 11, 2025 · 2.0.0
  2

• Drop try/except in get_param_groups_dataframes

  bug
  PennLINC/CuBIDS#449 · Filter by author tsalo opened on Mar 3, 2025

• Use +s to delimit variant elements

  enhancement
  PennLINC/CuBIDS#433 · Filter by author tsalo opened on Feb 12, 2025

• updating names of files in scans.tsv after running cubids apply

  enhancement
  PennLINC/CuBIDS#426 · Filter by author B-Sevchik opened on Feb 5, 2025
  2

• Split out CuBIDS.change_filename into file- and modality-specific functions

  refactor
  PennLINC/CuBIDS#422 · Filter by author tsalo opened on Jan 31, 2025

• Evaluate obliquity as an array of values

  enhancement
  PennLINC/CuBIDS#421 · Filter by author tsalo opened on Jan 31, 2025
  7

• Store CuBIDS code directory as attribute instead of existence of code directory

  refactor
  PennLINC/CuBIDS#420 · Filter by author tsalo opened on Jan 31, 2025

• Break up CuBIDS class into functions as much as possible

  refactor
  PennLINC/CuBIDS#418 · Filter by author tsalo opened on Jan 30, 2025
  2

• Convert test skeleton dictionaries to YAML files

  testing
  PennLINC/CuBIDS#412 · Filter by author tsalo opened on Jan 18, 2025

• Remove HISTORY and AUTHORS pages and link to release notes for changelog

  documentation
  Task

  PennLINC/CuBIDS#405 · Filter by author tsalo opened on Jan 17, 2025

• Update the issue templates to include new issue features

  maintenance
  Task

  PennLINC/CuBIDS#399 · Filter by author tsalo opened on Jan 17, 2025

• Rename main module (cubids.cubids) to prevent name collisions

  refactor
  Task

  PennLINC/CuBIDS#390 · Filter by author tsalo opened on Jan 16, 2025

• review commented out code & ominous notes

  maintenance
  PennLINC/CuBIDS#389 · Filter by author singlesp opened on Jan 16, 2025

• Add command to write inherited metadata to bottom-level files

  enhancementpriority: low
  Feature

  PennLINC/CuBIDS#387 · Filter by author tsalo opened on Jan 16, 2025
  1

• Add information on test-driven development to contributing guidelines

  documentation
  PennLINC/CuBIDS#386 · Filter by author tsalo opened on Jan 16, 2025 · 2.0.0

• Add CONTRIBUTING.rst and code of conduct to docs

  documentationmaintenance
  PennLINC/CuBIDS#385 · Filter by author tsalo opened on Jan 16, 2025 · 2.0.0

• has_fieldmap is incorrectly assessed when a bids URI is used

  bug
  Bug

  PennLINC/CuBIDS#378 · Filter by author mattcieslak opened on Jan 15, 2025 · 2.0.0
  1

• Replace hardcoded separators with os.sep (or pathlib stuff)

  bug
  Bug

  PennLINC/CuBIDS#368 · Filter by author tsalo opened on Jan 15, 2025