Issues

• What are the inputs and outputs of the model?

  Urinx/alphafold_pytorch#36 · Filter by author elephantpanda opened on Oct 25, 2023

• bin_x = np.concatenate([exp_range_n_y // (1 << i) % 2 for i in range(binary_code_bits)], 1)

  Urinx/alphafold_pytorch#35 · Filter by author gongshuai0606 opened on Mar 10, 2023

• Can AlphaFold2 predict the structure of cyclic peptides?

  Urinx/alphafold_pytorch#33 · Filter by author JustinDoIt opened on Sep 8, 2021

• Alphafold fails after generating features

  Urinx/alphafold_pytorch#31 · Filter by author raghavshroff opened on May 14, 2021

• Alphafold input data question

  Urinx/alphafold_pytorch#24 · Filter by author Planet-KIM opened on Mar 10, 2021

• Alphafold other protein dataset question

  Urinx/alphafold_pytorch#23 · Filter by author Planet-KIM opened on Mar 9, 2021

• How to solute this problem in dataset.py(ProteinDataset method)

  Urinx/alphafold_pytorch#22 · Filter by author Planet-KIM opened on Feb 24, 2021

• Optimization/ Gradient Descent

  Urinx/alphafold_pytorch#21 · Filter by author tokiinan5 opened on Feb 19, 2021

• How can I get the pkl file?

  Urinx/alphafold_pytorch#17 · Filter by author ibr1996 opened on Jan 12, 2021
  4

• exit() at line 164 of feature.py prevents the npy. be saved

  Urinx/alphafold_pytorch#16 · Filter by author nicolasfredesfranco opened on Jan 11, 2021
  2

• Can I use this code in Windows? or Linux is preferable?

  Urinx/alphafold_pytorch#15 · Filter by author shyamdholakia opened on Dec 22, 2020

• Problem running octave plmDCA.m test_data/T1019s2.aln

  Urinx/alphafold_pytorch#14 · Filter by author Maj18 opened on Dec 19, 2020
  1

• Include a ligand in the structure

  Urinx/alphafold_pytorch#13 · Filter by author jhrcook opened on Dec 3, 2020
  2

• feature.sh does not generate .pkl or .tfrec file from T1019s2.seq

  Urinx/alphafold_pytorch#10 · Filter by author sean-lin-tw opened on May 18, 2020
  13

• KeyError: 'X'

  Urinx/alphafold_pytorch#8 · Filter by author Lorenzo360 opened on Apr 28, 2020
  5

• How to use plmDCA.m

  Urinx/alphafold_pytorch#7 · Filter by author KotaroTsuboyama opened on Apr 13, 2020
  1

• utils module

  Urinx/alphafold_pytorch#6 · Filter by author istolarek opened on Apr 8, 2020

• How to use feature.sh and feed already created MSA

  Urinx/alphafold_pytorch#3 · Filter by author pentadotddot opened on Mar 31, 2020